Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03465.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7023
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:6137 original size:19 final size:19

Alignment explanation


    Indices: 6091--6138  Score: 55
    Period size: 19  Copynumber: 2.6  Consensus size: 19

       6081 GTATATATTT

                               
       6091 TAAA-TTTATTTAGGTAGA
          1 TAAATTTTATTTAGGTAGA

                 *              
       6109 TAAATCTTATTT-GGATAGA
          1 TAAATTTTATTTAGG-TAGA

               *       
       6128 TAAGTTTTATT
          1 TAAATTTTATT

       6139 CATATTCTAG


Statistics
Matches: 25,  Mismatches: 3, Indels: 3
        0.81            0.10        0.10

Matches are distributed among these distances:
  18    6  0.24
  19   19  0.76

ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48


Consensus pattern (19 bp):   
TAAATTTTATTTAGGTAGA
Done.