Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03470.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 429

Length: 716
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32


Found at i:689 original size:9 final size:9

Alignment explanation


    Indices: 675--700  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

        665 CAGTAACAAT

                     
        675 AAGAATAAG
          1 AAGAATAAG

                     
        684 AAGAATAAG
          1 AAGAATAAG

                    
        693 AAGAATAA
          1 AAGAATAA

        701 TAACAACAAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.69, C:0.00, G:0.19, T:0.12


Consensus pattern (9 bp):   
AAGAATAAG
Done.