Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03483.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4322
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30


Found at i:4035 original size:15 final size:15

Alignment explanation


    Indices: 4015--4044  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       4005 CTGGATAGTT

                           
       4015 TAGGTATTTTAATTG
          1 TAGGTATTTTAATTG

                           
       4030 TAGGTATTTTAATTG
          1 TAGGTATTTTAATTG

       4045 ATCGGGTCTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53


Consensus pattern (15 bp):   
TAGGTATTTTAATTG
Done.