Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03505.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4281
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29


Found at i:3289 original size:39 final size:39

Alignment explanation


    Indices: 3114--3292  Score: 182
    Period size: 39  Copynumber: 4.6  Consensus size: 39

       3104 TTTTGCTATT

                                            * *    *
       3114 TCAGGGCCAAAGAGGAAAAT-AGAAGATTCCTATGATTTT
          1 TCAGGGCCAAAGA-GAAAATCAGAAGATTCCTGTAATTTC

                  *     *     *          *   *  *  
       3153 TCAGGGGCAAAGCGAAAACCAGAAGATTCTTGTGATGTC
          1 TCAGGGCCAAAGAGAAAATCAGAAGATTCCTGTAATTTC

                  *                *        *     * 
       3192 TCAGGGGCAAAGAGAAAAT-ATGGAGATTCCTCTAATTCC
          1 TCAGGGCCAAAGAGAAAATCA-GAAGATTCCTGTAATTTC

                 *              *                 *
       3231 TCAGGACCAAAGAGAAAATCTGAAGATTCCTGTAATTTA
          1 TCAGGGCCAAAGAGAAAATCAGAAGATTCCTGTAATTTC

                                   
       3270 TCAGGGCCAAAGAGAAAATCAGA
          1 TCAGGGCCAAAGAGAAAATCAGA

       3293 GGACTCTTCC


Statistics
Matches: 113,  Mismatches: 24, Indels: 6
        0.79            0.17        0.04

Matches are distributed among these distances:
  38    6  0.05
  39  107  0.95

ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22


Consensus pattern (39 bp):   
TCAGGGCCAAAGAGAAAATCAGAAGATTCCTGTAATTTC
Done.