Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00128.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3453
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:3082 original size:126 final size:126

Alignment explanation


    Indices: 2918--3167  Score: 333
    Period size: 126  Copynumber: 2.0  Consensus size: 126

       2908 TTCACTTTGG

                            *                        *      **             * 
       2918 AAATAATGAAAGGGGTTGAAGATTTCGAGATTCAAATATCGGATTTGCGGTTGTTTTTTT-AAGA
          1 AAATAATGAAAGGGGTCGAAGATTTCGAGATTCAAATATCGAATTTGCAATTGTTTTTTTAAAAA

             *                    *                                        
       2982 ATATTAGTTGGTATGAACCAAATTTTGATTACA-ACTCGTATTCGACATTCATTCTATTCCGT
         66 AGATTAGTT-GTATGAACCAAACTTTGATTACATACTCGTATTCGACATTCATTCT-TTCCGT

                 *  *                *      **                               
       3044 AAATAGTGGAAGGGGTCGAAGATTTTGAGATTTGAATATCGAATTTGCAATTGTTTTTTTAAAAA
          1 AAATAATGAAAGGGGTCGAAGATTTCGAGATTCAAATATCGAATTTGCAATTGTTTTTTTAAAAA

                       *     *                        *                
       3109 AGATTAGTTGTGTGAACTAAACTTTGATTACATACTCGTATTTGACATTCATTCTTTCC
         66 AGATTAGTTGTATGAACCAAACTTTGATTACATACTCGTATTCGACATTCATTCTTTCC

       3168 CATGAAGGGG


Statistics
Matches: 107,  Mismatches: 15, Indels: 4
        0.85            0.12        0.03

Matches are distributed among these distances:
 126   75  0.70
 127   32  0.30

ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39


Consensus pattern (126 bp):   
AAATAATGAAAGGGGTCGAAGATTTCGAGATTCAAATATCGAATTTGCAATTGTTTTTTTAAAAA
AGATTAGTTGTATGAACCAAACTTTGATTACATACTCGTATTCGACATTCATTCTTTCCGT
Done.