Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03506.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4027
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:1734 original size:64 final size:64

Alignment explanation


    Indices: 1627--1768  Score: 205
    Period size: 64  Copynumber: 2.2  Consensus size: 64

       1617 TGAATGTAAT

                        **    *            *      *                          
       1627 TGAAATATATTTGCATGTTTATATAATTTATTAAGAAATTAAAAATTAGACAATAAATATATATG
          1 TGAAA-ATATTTAAATGTGTATATAATTTATCAAGAAACTAAAAATTAGACAATAAATATATATG

                                                              *             
       1692 TGAAAATATTTAAATGTGTATATAATTTATCAAGAAACTAAAAATTAGACTATAAATATATATG
          1 TGAAAATATTTAAATGTGTATATAATTTATCAAGAAACTAAAAATTAGACAATAAATATATATG

            *             
       1756 AG-AAATATTTAAA
          1 TGAAAATATTTAAA

       1769 AACATTGATA


Statistics
Matches: 70,  Mismatches: 7, Indels: 2
        0.89            0.09        0.03

Matches are distributed among these distances:
  63   11  0.16
  64   54  0.77
  65    5  0.07

ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37


Consensus pattern (64 bp):   
TGAAAATATTTAAATGTGTATATAATTTATCAAGAAACTAAAAATTAGACAATAAATATATATG
Done.