Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03511.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1793
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30


Found at i:1329 original size:15 final size:15

Alignment explanation


    Indices: 1309--1341  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       1299 AATTATTGGG

                           
       1309 TTGAGCCTGAAAAGT
          1 TTGAGCCTGAAAAGT

                        *  
       1324 TTGAGCCTGAAAGGT
          1 TTGAGCCTGAAAAGT

               
       1339 TTG
          1 TTG

       1342 TAAACAGTTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30


Consensus pattern (15 bp):   
TTGAGCCTGAAAAGT
Done.