Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03529.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2389
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38


Found at i:1976 original size:5 final size:5

Alignment explanation


    Indices: 1966--1992  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

       1956 ATTATATATG

                                            
       1966 TTCTT TTCTT TTCTT TTCTT TTCTT TT
          1 TTCTT TTCTT TTCTT TTCTT TTCTT TT

       1993 TTTGATTTGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (5 bp):   
TTCTT

Done.