Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03532.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4863
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:4781 original size:14 final size:14

Alignment explanation


    Indices: 4762--4793  Score: 64
    Period size: 14  Copynumber: 2.3  Consensus size: 14

       4752 AAACAAATTG

                          
       4762 GAAAGATTTATTAT
          1 GAAAGATTTATTAT

                          
       4776 GAAAGATTTATTAT
          1 GAAAGATTTATTAT

                
       4790 GAAA
          1 GAAA

       4794 TACAATTTGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.47, C:0.00, G:0.16, T:0.38


Consensus pattern (14 bp):   
GAAAGATTTATTAT
Done.