Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03532.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4769
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32


Found at i:4687 original size:14 final size:14

Alignment explanation


    Indices: 4668--4699  Score: 64
    Period size: 14  Copynumber: 2.3  Consensus size: 14

       4658 AAACAAATTG

                          
       4668 GAAAGATTTATTAT
          1 GAAAGATTTATTAT

                          
       4682 GAAAGATTTATTAT
          1 GAAAGATTTATTAT

                
       4696 GAAA
          1 GAAA

       4700 TACAATTTGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.47, C:0.00, G:0.16, T:0.38


Consensus pattern (14 bp):   
GAAAGATTTATTAT
Done.