Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03533.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 405

Length: 676
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39


Found at i:523 original size:16 final size:17

Alignment explanation


    Indices: 502--536  Score: 54
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        492 TTGTATTTTT

                             
        502 TAATTTACCAA-AAAAA
          1 TAATTTACCAATAAAAA

                  *          
        518 TAATTTGCCAATAAAAA
          1 TAATTTACCAATAAAAA

              
        535 TA
          1 TA

        537 GTTTTTTTGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16   10  0.59
  17    7  0.41

ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29


Consensus pattern (17 bp):   
TAATTTACCAATAAAAA

Done.