Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03547.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 456

Length: 761
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34


Found at i:162 original size:41 final size:42

Alignment explanation


    Indices: 117--204  Score: 144
    Period size: 42  Copynumber: 2.1  Consensus size: 42

        107 AATTAAAATT

                                                       
        117 AAAATTGAGCAATAGTGGCG-TTTTTAG-GTAAAACGCCGCAA
          1 AAAATTGAGCAATAGTGGCGTTTTTTAGTG-AAAACGCCGCAA

                      *                               
        158 AAAATTGAGCTATAGTGGCGTTTTTTAGTGAAAACGCCGCAA
          1 AAAATTGAGCAATAGTGGCGTTTTTTAGTGAAAACGCCGCAA

                 
        200 AAAAT
          1 AAAAT

        205 CTAAAAATTA


Statistics
Matches: 44,  Mismatches: 1, Indels: 3
        0.92            0.02        0.06

Matches are distributed among these distances:
  41   19  0.43
  42   24  0.55
  43    1  0.02

ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26


Consensus pattern (42 bp):   
AAAATTGAGCAATAGTGGCGTTTTTTAGTGAAAACGCCGCAA

Done.