Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03553.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1336
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:1235 original size:23 final size:23

Alignment explanation


    Indices: 1209--1260  Score: 68
    Period size: 23  Copynumber: 2.3  Consensus size: 23

       1199 CTGTTTTTTG

                     *             
       1209 TTTAGGCTGGCTGGCTTGGTTTA
          1 TTTAGGCTGACTGGCTTGGTTTA

                  *   *   *        
       1232 TTTAGGTTGATTGGTTTGGTTTA
          1 TTTAGGCTGACTGGCTTGGTTTA

                  
       1255 TTTAGG
          1 TTTAGG

       1261 TCCAGGCTAA


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.12, C:0.06, G:0.33, T:0.50


Consensus pattern (23 bp):   
TTTAGGCTGACTGGCTTGGTTTA
Done.