Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03558.N12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3787
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:3502 original size:4 final size:4

Alignment explanation


    Indices: 3493--3526  Score: 68
    Period size: 4  Copynumber: 8.5  Consensus size: 4

       3483 GCTAGTAAAA

                                                      
       3493 GGGT GGGT GGGT GGGT GGGT GGGT GGGT GGGT GG
          1 GGGT GGGT GGGT GGGT GGGT GGGT GGGT GGGT GG

       3527 TGTTTTAGTA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   30  1.00

ACGTcount: A:0.00, C:0.00, G:0.76, T:0.24


Consensus pattern (4 bp):   
GGGT

Found at i:3626 original size:33 final size:33

Alignment explanation


    Indices: 3573--3635  Score: 99
    Period size: 33  Copynumber: 1.9  Consensus size: 33

       3563 TTCTAAAAAT

                           *                 
       3573 CTTTGTTGGCTTAGGGGTTTAATTTTGTAGTAC
          1 CTTTGTTGGCTTAGGAGTTTAATTTTGTAGTAC

                     *  *                 
       3606 CTTTGTTGGTTTTGGAGTTTAATTTTGTAG
          1 CTTTGTTGGCTTAGGAGTTTAATTTTGTAG

       3636 AACCATTAGG


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  33   27  1.00

ACGTcount: A:0.14, C:0.06, G:0.27, T:0.52


Consensus pattern (33 bp):   
CTTTGTTGGCTTAGGAGTTTAATTTTGTAGTAC
Done.