Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01270.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 641

Length: 1069
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30


Found at i:985 original size:49 final size:49

Alignment explanation


    Indices: 908--1004  Score: 149
    Period size: 49  Copynumber: 2.0  Consensus size: 49

        898 TCCTCTAAAT

                *        *        *                *         
        908 ATATTTGAAAAAATTTAGAGATGATTAAGCATACTTGTAGTGGACACAG
          1 ATATGTGAAAAAACTTAGAGATAATTAAGCATACTTGTAATGGACACAG

                            *                               
        957 ATATGTGAAAAAACTTGGAGATAATTAAGCATACTTGTAATGGACACA
          1 ATATGTGAAAAAACTTAGAGATAATTAAGCATACTTGTAATGGACACA

       1005 TACCCAGTAT


Statistics
Matches: 43,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  49   43  1.00

ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29


Consensus pattern (49 bp):   
ATATGTGAAAAAACTTAGAGATAATTAAGCATACTTGTAATGGACACAG
Done.