Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03574.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 405

Length: 675
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:560 original size:27 final size:27

Alignment explanation


    Indices: 530--584  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        520 TGGGCTATTA

                                       
        530 TGAGCTTAGTCAAGAAGATGGAGACTT
          1 TGAGCTTAGTCAAGAAGATGGAGACTT

                                       
        557 TGAGCTTAGTCAAGAAGATGGAGACTT
          1 TGAGCTTAGTCAAGAAGATGGAGACTT

             
        584 T
          1 T

        585 ACCCATTCGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27


Consensus pattern (27 bp):   
TGAGCTTAGTCAAGAAGATGGAGACTT
Done.