Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01270.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 761

Length: 1269
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29


Found at i:48 original size:7 final size:7

Alignment explanation


    Indices: 36--65  Score: 60
    Period size: 7  Copynumber: 4.3  Consensus size: 7

         26 GAATCAAACC

                   
         36 CAGCAGG
          1 CAGCAGG

                   
         43 CAGCAGG
          1 CAGCAGG

                   
         50 CAGCAGG
          1 CAGCAGG

                   
         57 CAGCAGG
          1 CAGCAGG

              
         64 CA
          1 CA

         66 AAGAGAGAGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   23  1.00

ACGTcount: A:0.30, C:0.30, G:0.40, T:0.00


Consensus pattern (7 bp):   
CAGCAGG

Found at i:1185 original size:49 final size:49

Alignment explanation


    Indices: 1108--1204  Score: 149
    Period size: 49  Copynumber: 2.0  Consensus size: 49

       1098 TCCTCTAAAT

                *        *        *                *         
       1108 ATATTTGAAAAAATTTAGAGATGATTAAGCATACTTGTAGTGGACACAG
          1 ATATGTGAAAAAACTTAGAGATAATTAAGCATACTTGTAATGGACACAG

                            *                               
       1157 ATATGTGAAAAAACTTGGAGATAATTAAGCATACTTGTAATGGACACA
          1 ATATGTGAAAAAACTTAGAGATAATTAAGCATACTTGTAATGGACACA

       1205 TACCCAGTAT


Statistics
Matches: 43,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  49   43  1.00

ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29


Consensus pattern (49 bp):   
ATATGTGAAAAAACTTAGAGATAATTAAGCATACTTGTAATGGACACAG
Done.