Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03592.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2647
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31


Found at i:2384 original size:21 final size:21

Alignment explanation


    Indices: 2358--2399  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2348 TTGGGAGTCT

                                 
       2358 TCTGGCATCTCTGAGGTGAAA
          1 TCTGGCATCTCTGAGGTGAAA

                                 
       2379 TCTGGCATCTCTGAGGTGAAA
          1 TCTGGCATCTCTGAGGTGAAA

       2400 AATGAAGTGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29


Consensus pattern (21 bp):   
TCTGGCATCTCTGAGGTGAAA
Done.