Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03595.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 816

Length: 1360
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33


Found at i:1250 original size:25 final size:25

Alignment explanation


    Indices: 1216--1270  Score: 110
    Period size: 25  Copynumber: 2.2  Consensus size: 25

       1206 AATTTAATAG

                                     
       1216 CACAATAAATCACTACAATCACATT
          1 CACAATAAATCACTACAATCACATT

                                     
       1241 CACAATAAATCACTACAATCACATT
          1 CACAATAAATCACTACAATCACATT

                 
       1266 CACAA
          1 CACAA

       1271 AATATGCAAA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   30  1.00

ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22


Consensus pattern (25 bp):   
CACAATAAATCACTACAATCACATT
Done.