Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03599.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4995
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:4026 original size:13 final size:13

Alignment explanation


    Indices: 4008--4034  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       3998 CTTTTGCTAA

                         
       4008 GGATTTTATTGTT
          1 GGATTTTATTGTT

                         
       4021 GGATTTTATTGTT
          1 GGATTTTATTGTT

             
       4034 G
          1 G

       4035 CTTTTCCCCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.15, C:0.00, G:0.26, T:0.59


Consensus pattern (13 bp):   
GGATTTTATTGTT
Done.