Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03601.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4247
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:3845 original size:15 final size:15

Alignment explanation


    Indices: 3827--3856  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       3817 AATAAGAAGA

                           
       3827 ATGAAACTTCGCATG
          1 ATGAAACTTCGCATG

                           
       3842 ATGAAACTTCGCATG
          1 ATGAAACTTCGCATG

       3857 CTTTACTATC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27


Consensus pattern (15 bp):   
ATGAAACTTCGCATG
Done.