Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03607.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 462

Length: 771
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:703 original size:47 final size:47

Alignment explanation


    Indices: 647--766  Score: 168
    Period size: 47  Copynumber: 2.6  Consensus size: 47

        637 GTTTATCTGT

                         *        *                      * 
        647 TCGACCAGTGGTTTATCCACAATATATTCTAGTCGGCAATCGCCTGC
          1 TCGACCAGTGGTTCATCCACAACATATTCTAGTCGGCAATCGCCTAC

             *                 *   *            *          
        694 TTGACCAGTGGTTCATCCAGAACCTATTCTAGTCGGTAATCGCCTAC
          1 TCGACCAGTGGTTCATCCACAACATATTCTAGTCGGCAATCGCCTAC

                     *                
        741 TCGACCAGTAGTTCATCCACAACATA
          1 TCGACCAGTGGTTCATCCACAACATA

        767 CTAGC


Statistics
Matches: 62,  Mismatches: 11, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  47   62  1.00

ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28


Consensus pattern (47 bp):   
TCGACCAGTGGTTCATCCACAACATATTCTAGTCGGCAATCGCCTAC
Done.