Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03622.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3210
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30


Found at i:1857 original size:22 final size:22

Alignment explanation


    Indices: 1829--1871  Score: 86
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1819 TTGGCTGGGG

                                  
       1829 AACTAGGAGCAAATAGGTTAAA
          1 AACTAGGAGCAAATAGGTTAAA

                                 
       1851 AACTAGGAGCAAATAGGTTAA
          1 AACTAGGAGCAAATAGGTTAA

       1872 CTCCGACGCA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.49, C:0.09, G:0.23, T:0.19


Consensus pattern (22 bp):   
AACTAGGAGCAAATAGGTTAAA
Done.