Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03637.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3423
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29


Found at i:3340 original size:30 final size:30

Alignment explanation


    Indices: 3306--3376  Score: 115
    Period size: 30  Copynumber: 2.3  Consensus size: 30

       3296 GTTAGGAAAG

                      *                   
       3306 TATTGTAAAAGGATATAATAATTTTTAATT
          1 TATTGTAAAAAGATATAATAATTTTTAATT

                                          
       3336 TATTGTAAAAAGATATAATAATTTTTAATT
          1 TATTGTAAAAAGATATAATAATTTTTAATT

               *       
       3366 TACATGTAAAA
          1 TA-TTGTAAAA

       3377 TTTCAGGAAA


Statistics
Matches: 38,  Mismatches: 2, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
  30   31  0.82
  31    7  0.18

ACGTcount: A:0.46, C:0.01, G:0.08, T:0.44


Consensus pattern (30 bp):   
TATTGTAAAAAGATATAATAATTTTTAATT

Done.