Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03644.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2236
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32


Found at i:1319 original size:105 final size:105

Alignment explanation


    Indices: 1122--1338  Score: 274
    Period size: 105  Copynumber: 2.1  Consensus size: 105

       1112 TCACTTAATA

                *                         *                  *               
       1122 TTGTCACATATAATATATTGATCGATGCACTTTGCAAGGAAGGAATGATTTCTAAAGCTATAGAG
          1 TTGTTACATATAATATATTGATCGATGCACATTGCAAGGAAGGAATGATCTCTAAAGCTATAGAG

                                                    
       1187 ATCGTTGACACAATGAGAAAGAAAGGCATTGAGCCCAATG
         66 ATCGTTGACACAATGAGAAAGAAAGGCATTGAGCCCAATG

                        *       * *                    *   *     *        *  
       1227 TTGTTACATATAGTATATTGGTTGATGCACATTGCAAGGAAGGGATGGTCTCTGAAGCTGA-GGA
          1 TTGTTACATATAATATATTGATCGATGCACATTGCAAGGAAGGAATGATCTCTAAAGCT-ATAGA

            *         *      *    **            *    
       1291 TATCGTTGACGCAATGATAAAGCGAGGCATTGAGCCTAATG
         65 GATCGTTGACACAATGAGAAAGAAAGGCATTGAGCCCAATG

                   
       1332 TTGTTAC
          1 TTGTTAC

       1339 CCATAATGCA


Statistics
Matches: 95,  Mismatches: 16, Indels: 2
        0.84            0.14        0.02

Matches are distributed among these distances:
 105   94  0.99
 106    1  0.01

ACGTcount: A:0.33, C:0.14, G:0.25, T:0.29


Consensus pattern (105 bp):   
TTGTTACATATAATATATTGATCGATGCACATTGCAAGGAAGGAATGATCTCTAAAGCTATAGAG
ATCGTTGACACAATGAGAAAGAAAGGCATTGAGCCCAATG
Done.