Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03652.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3507
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30


Found at i:2209 original size:46 final size:46

Alignment explanation


    Indices: 2142--2233  Score: 166
    Period size: 46  Copynumber: 2.0  Consensus size: 46

       2132 CCCAAGTTTG

                                              * *         
       2142 TTATTGAATGCTCAAATACTTAGAAATAGAGAGTTCGATAGTGTAC
          1 TTATTGAATGCTCAAATACTTAGAAATAGAGAGTGCAATAGTGTAC

                                                          
       2188 TTATTGAATGCTCAAATACTTAGAAATAGAGAGTGCAATAGTGTAC
          1 TTATTGAATGCTCAAATACTTAGAAATAGAGAGTGCAATAGTGTAC

       2234 CTTTTATCTT


Statistics
Matches: 44,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  46   44  1.00

ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32


Consensus pattern (46 bp):   
TTATTGAATGCTCAAATACTTAGAAATAGAGAGTGCAATAGTGTAC
Done.