Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03680.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 486

Length: 811
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37


Found at i:243 original size:30 final size:30

Alignment explanation


    Indices: 193--251  Score: 82
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        183 ACCATAAATT

                     *           *        
        193 GTTTAGGGTTGTAGAATTTGGGGATTTTGA
          1 GTTTAGGGTGGTAGAATTTGGAGATTTTGA

                *        *               
        223 GTTTTGGGTGGTATAATTTGGAGATTTTG
          1 GTTTAGGGTGGTAGAATTTGGAGATTTTG

        252 GGTAAAGGTT


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  30   25  1.00

ACGTcount: A:0.19, C:0.00, G:0.36, T:0.46


Consensus pattern (30 bp):   
GTTTAGGGTGGTAGAATTTGGAGATTTTGA
Done.