Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03692.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 493

Length: 822
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34


Found at i:708 original size:19 final size:19

Alignment explanation


    Indices: 672--722  Score: 63
    Period size: 19  Copynumber: 2.8  Consensus size: 19

        662 ATGGGGGAAG

                                
        672 GATC-TATATATATAATGTA
          1 GATCATATATATAT-ATGTA

                               
        691 GATCATATATATATATGTA
          1 GATCATATATATATATGTA

            *              
        710 TAT-AT-TATATATA
          1 GATCATATATATATA

        723 GATTACATAT


Statistics
Matches: 30,  Mismatches: 1, Indels: 4
        0.86            0.03        0.11

Matches are distributed among these distances:
  17    8  0.27
  18    2  0.07
  19   11  0.37
  20    9  0.30

ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45


Consensus pattern (19 bp):   
GATCATATATATATATGTA
Done.