Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03701.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3246
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.34


Found at i:59 original size:21 final size:21

Alignment explanation


    Indices: 33--72  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

         23 CAAAACATTC

                      *   *      
         33 AACAGAAAATTAAAGAAGAAA
          1 AACAGAAAATAAAAAAAGAAA

                               
         54 AACAGAAAATAAAAAAAGA
          1 AACAGAAAATAAAAAAAGA

         73 GTTCAGAATT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.75, C:0.05, G:0.12, T:0.07


Consensus pattern (21 bp):   
AACAGAAAATAAAAAAAGAAA
Done.