Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03711.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4805
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35


Found at i:408 original size:21 final size:21

Alignment explanation


    Indices: 366--408  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        356 GGGGAAAAAG

                             *   
        366 ATGATCGCTTCGATAATGTTA
          1 ATGATCGCTTCGATAATCTTA

                      *           
        387 ATGAT-GCTTTGATAAATCTTA
          1 ATGATCGCTTCGAT-AATCTTA

             
        408 A
          1 A

        409 GTAAGAAATC


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  20    7  0.37
  21   12  0.63

ACGTcount: A:0.33, C:0.12, G:0.16, T:0.40


Consensus pattern (21 bp):   
ATGATCGCTTCGATAATCTTA

Found at i:3505 original size:21 final size:21

Alignment explanation


    Indices: 3481--3524  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       3471 GAGAGTGCTC

                                 
       3481 AAGAAACTGAGTTTTAGTTAT
          1 AAGAAACTGAGTTTTAGTTAT

                                 
       3502 AAGAAACTGAGTTTTAGTTAT
          1 AAGAAACTGAGTTTTAGTTAT

              
       3523 AA
          1 AA

       3525 TGTTTAAAAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36


Consensus pattern (21 bp):   
AAGAAACTGAGTTTTAGTTAT
Done.