Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03714.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2944
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34


Found at i:2868 original size:22 final size:21

Alignment explanation


    Indices: 2837--2904  Score: 100
    Period size: 22  Copynumber: 3.1  Consensus size: 21

       2827 TTAAGACATG

                                  
       2837 TTTGTCTTTTTGATGATTTCTT
          1 TTTGT-TTTTTGATGATTTCTT

                                  
       2859 TTTGTTTTTTGAATGATTTCTT
          1 TTTGTTTTTTG-ATGATTTCTT

                            *     
       2881 TTTGTTTTTTGAGTGAATTCTT
          1 TTTGTTTTTTGA-TGATTTCTT

              
       2903 TT
          1 TT

       2905 CGATGATTTC


Statistics
Matches: 43,  Mismatches: 1, Indels: 4
        0.90            0.02        0.08

Matches are distributed among these distances:
  21    7  0.16
  22   36  0.84

ACGTcount: A:0.12, C:0.06, G:0.15, T:0.68


Consensus pattern (21 bp):   
TTTGTTTTTTGATGATTTCTT
Done.