Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03730.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3218
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.34


Found at i:18 original size:5 final size:6

Alignment explanation


    Indices: 2--40  Score: 51
    Period size: 6  Copynumber: 6.0  Consensus size: 6

          1 G

                                                        
          2 GAAAAA GAAAAA GAAAAA GAAAAA GCAAGAAA GGAAAAA
          1 GAAAAA GAAAAA GAAAAA GAAAAA G-AA-AAA -GAAAAA

         41 TCCTTCTTTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 5
        0.86            0.00        0.14

Matches are distributed among these distances:
   6   19  0.63
   7    5  0.17
   8    5  0.17
   9    1  0.03

ACGTcount: A:0.77, C:0.03, G:0.21, T:0.00


Consensus pattern (6 bp):   
GAAAAA

Found at i:1738 original size:21 final size:21

Alignment explanation


    Indices: 1712--1752  Score: 73
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1702 GCATGATGAA

                        *        
       1712 CTCAGGTGAGTTTTAATCTGG
          1 CTCAGGTGAGTTCTAATCTGG

                                
       1733 CTCAGGTGAGTTCTAATCTG
          1 CTCAGGTGAGTTCTAATCTG

       1753 CTTGGCATGA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.20, C:0.17, G:0.27, T:0.37


Consensus pattern (21 bp):   
CTCAGGTGAGTTCTAATCTGG
Done.