Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03730.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2201
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33


Found at i:18 original size:5 final size:6

Alignment explanation


    Indices: 2--40  Score: 51
    Period size: 6  Copynumber: 6.0  Consensus size: 6

          1 G

                                                        
          2 GAAAAA GAAAAA GAAAAA GAAAAA GCAAGAAA GGAAAAA
          1 GAAAAA GAAAAA GAAAAA GAAAAA G-AA-AAA -GAAAAA

         41 TCCTTCTTTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 5
        0.86            0.00        0.14

Matches are distributed among these distances:
   6   19  0.63
   7    5  0.17
   8    5  0.17
   9    1  0.03

ACGTcount: A:0.77, C:0.03, G:0.21, T:0.00


Consensus pattern (6 bp):   
GAAAAA

Done.