Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03732.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1148
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:937 original size:20 final size:20

Alignment explanation


    Indices: 912--949  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        902 GGTGTTCGGC

                                
        912 AAAAGCATTTCATGTCTGGA
          1 AAAAGCATTTCATGTCTGGA

                       *      
        932 AAAAGCATTTCGTGTCTG
          1 AAAAGCATTTCATGTCTG

        950 ATGCGAAATT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32


Consensus pattern (20 bp):   
AAAAGCATTTCATGTCTGGA
Done.