Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03736.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1116
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26


Found at i:38 original size:23 final size:23

Alignment explanation


    Indices: 8--53  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

          1 GGATGAC

                                   
          8 AGCGAAGCACCCTACCTCGGTTA
          1 AGCGAAGCACCCTACCTCGGTTA

                                   
         31 AGCGAAGCACCCTACCTCGGTTA
          1 AGCGAAGCACCCTACCTCGGTTA

         54 CTTAGTCCAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.26, C:0.35, G:0.22, T:0.17


Consensus pattern (23 bp):   
AGCGAAGCACCCTACCTCGGTTA

Found at i:730 original size:57 final size:57

Alignment explanation


    Indices: 667--780  Score: 219
    Period size: 57  Copynumber: 2.0  Consensus size: 57

        657 TGTGGAATAA

                                                                     
        667 AATAAATAAATATGTGGAAGAAGAAAAGTTCAGAAGAACTCCCCATGTAGTTACTGT
          1 AATAAATAAATATGTGGAAGAAGAAAAGTTCAGAAGAACTCCCCATGTAGTTACTGT

                                                      *              
        724 AATAAATAAATATGTGGAAGAAGAAAAGTTCAGAAGAACTCCTCATGTAGTTACTGT
          1 AATAAATAAATATGTGGAAGAAGAAAAGTTCAGAAGAACTCCCCATGTAGTTACTGT

        781 CATTCACGCA


Statistics
Matches: 56,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  57   56  1.00

ACGTcount: A:0.44, C:0.11, G:0.19, T:0.25


Consensus pattern (57 bp):   
AATAAATAAATATGTGGAAGAAGAAAAGTTCAGAAGAACTCCCCATGTAGTTACTGT
Done.