Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03741.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 732

Length: 1220
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39


Found at i:1051 original size:31 final size:32

Alignment explanation


    Indices: 981--1052  Score: 87
    Period size: 31  Copynumber: 2.3  Consensus size: 32

        971 TAAAAATTTT

                    *              *      * 
        981 TAAGTTCAAACTCCAATATGAAAGCAATTGTC
          1 TAAGTTCATACTCCAATATGAAAACAATTGAC

                                             
       1013 TAA-TTCATAC-CCAAATATGAAAACAATT-AC
          1 TAAGTTCATACTCC-AATATGAAAACAATTGAC

                      
       1043 TAAGTTCATA
          1 TAAGTTCATA

       1053 AATTAATTTG


Statistics
Matches: 35,  Mismatches: 3, Indels: 5
        0.81            0.07        0.12

Matches are distributed among these distances:
  30    6  0.17
  31   26  0.74
  32    3  0.09

ACGTcount: A:0.44, C:0.18, G:0.08, T:0.29


Consensus pattern (32 bp):   
TAAGTTCATACTCCAATATGAAAACAATTGAC
Done.