Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03742.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1901
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32


Found at i:376 original size:26 final size:26

Alignment explanation


    Indices: 341--554  Score: 365
    Period size: 26  Copynumber: 8.2  Consensus size: 26

        331 TGATACAAAT

                                     *
        341 TGATAATAGGTTAGGTAAATGTTCCT
          1 TGATAATAGGTTAGGTAAATGTTCCA

                                      
        367 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                   *                  
        393 TGATAATGGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                                      
        419 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                   *                  
        445 TGATAATGGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                                      
        471 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                   *               *  
        497 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                   *               *  
        523 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                  
        549 TGATAA
          1 TGATAA

        555 GAATTTCATG


Statistics
Matches: 181,  Mismatches: 7, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26  181  1.00

ACGTcount: A:0.33, C:0.07, G:0.25, T:0.36


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTCCA

Done.