Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03752.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5855
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34


Found at i:4230 original size:21 final size:21

Alignment explanation


    Indices: 4202--4258  Score: 71
    Period size: 21  Copynumber: 2.7  Consensus size: 21

       4192 ACACTGGCTG

                              *  
       4202 CTCACACGGGCGTGTGT-CCC
          1 CTCACACGGGCGTGTGTGACC

                     *            
       4222 CTCCACACGAGCGTGTGTGACC
          1 CT-CACACGGGCGTGTGTGACC

                  *        
       4244 CTCACATGGGCGTGT
          1 CTCACACGGGCGTGT

       4259 AGACCCCAAC


Statistics
Matches: 31,  Mismatches: 4, Indels: 3
        0.82            0.11        0.08

Matches are distributed among these distances:
  20    2  0.06
  21   25  0.81
  22    4  0.13

ACGTcount: A:0.14, C:0.35, G:0.30, T:0.21


Consensus pattern (21 bp):   
CTCACACGGGCGTGTGTGACC
Done.