Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03753.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 867

Length: 1445
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33


Found at i:1342 original size:2 final size:2

Alignment explanation


    Indices: 1330--1368  Score: 69
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       1320 AAGTTATGTA

                                                                     
       1330 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1369 GTTTTTTTCC


Statistics
Matches: 36,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   2   34  0.94
   3    2  0.06

ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49


Consensus pattern (2 bp):   
AT

Done.