Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01280.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 504

Length: 840
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:183 original size:37 final size:37

Alignment explanation


    Indices: 118--226  Score: 166
    Period size: 37  Copynumber: 2.9  Consensus size: 37

        108 GTGTCAGAAA

                          *        *             
        118 AACCCATCTCCTCCGTCGCCTTCTCCCCGTGCATCGC
          1 AACCCATCTCCTCCATCGCCTTCGCCCCGTGCATCGC

               *               *                  
        155 AACTCAT-TCCCTCCATCGTCTTCGCCCCGTGCATCGC
          1 AACCCATCT-CCTCCATCGCCTTCGCCCCGTGCATCGC

                                               
        192 AACCCATCTCCTCCATCGCCTTCGCCCCGTGCATC
          1 AACCCATCTCCTCCATCGCCTTCGCCCCGTGCATC

        227 TGCTGCATAG


Statistics
Matches: 64,  Mismatches: 6, Indels: 4
        0.86            0.08        0.05

Matches are distributed among these distances:
  36    1  0.02
  37   62  0.97
  38    1  0.02

ACGTcount: A:0.13, C:0.50, G:0.13, T:0.25


Consensus pattern (37 bp):   
AACCCATCTCCTCCATCGCCTTCGCCCCGTGCATCGC

Found at i:774 original size:19 final size:19

Alignment explanation


    Indices: 752--792  Score: 57
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        742 TTTATTGATA

                               
        752 TTTTTA-TATTTAATCTAG
          1 TTTTTATTATTTAATCTAG

                         * *   
        770 TTTTTATTATTTATTTTAG
          1 TTTTTATTATTTAATCTAG

                
        789 TTTT
          1 TTTT

        793 GATTCTAAAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  18    6  0.30
  19   14  0.70

ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71


Consensus pattern (19 bp):   
TTTTTATTATTTAATCTAG
Done.