Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03773.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3302
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:107 original size:4 final size:4

Alignment explanation


    Indices: 98--124  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

         88 TTAGCATTCA

                                             
         98 ATAC ATAC ATAC ATAC ATAC ATAC ATA
          1 ATAC ATAC ATAC ATAC ATAC ATAC ATA

        125 TATATTCGAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26


Consensus pattern (4 bp):   
ATAC

Done.