Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00134.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2209
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:139 original size:10 final size:10

Alignment explanation


    Indices: 124--161  Score: 58
    Period size: 10  Copynumber: 3.8  Consensus size: 10

        114 AGAGTAAAAA

                      
        124 ATTTTCTTTC
          1 ATTTTCTTTC

                  *   
        134 ATTTTCCTTC
          1 ATTTTCTTTC

                      
        144 ATTTTCTTTC
          1 ATTTTCTTTC

            *       
        154 GTTTTCTT
          1 ATTTTCTT

        162 CTCTCTTCTC


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  10   25  1.00

ACGTcount: A:0.08, C:0.21, G:0.03, T:0.68


Consensus pattern (10 bp):   
ATTTTCTTTC
Done.