Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03783.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1031
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31


Found at i:30 original size:20 final size:20

Alignment explanation


    Indices: 2--51  Score: 64
    Period size: 20  Copynumber: 2.5  Consensus size: 20

          1 G

                                
          2 TCTCCTTCTTCATCAGTCCA
          1 TCTCCTTCTTCATCAGTCCA

                *      *   *   *
         22 TCTCATTCTTCTTCATTCCT
          1 TCTCCTTCTTCATCAGTCCA

                      
         42 TCTCCTTCTT
          1 TCTCCTTCTT

         52 TTGTTCTTCA


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  20   25  1.00

ACGTcount: A:0.10, C:0.38, G:0.02, T:0.50


Consensus pattern (20 bp):   
TCTCCTTCTTCATCAGTCCA
Done.