Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03799.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1238
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28


Found at i:195 original size:77 final size:77

Alignment explanation


    Indices: 93--325  Score: 412
    Period size: 77  Copynumber: 3.0  Consensus size: 77

         83 TTATTGAAAT

                                                                             
         93 AGAGTGTAAAGAGTGATTAATCTTTACAAAGCATCGGAAACTCCGGAATCAGATTTCGCTTATCT
          1 AGAGTGTAAAGAGTGATTAATCTTTACAAAGCATCGGAAACTCCGGAATCAGATTTCGCTTATCT

             *          
        158 CGGATGAACTCA
         66 CAGATGAACTCA

                                                                     *       
        170 AGAGTGTAAAGAGTGATTAATCTTTACAAAGCATCGGAAACTCCGGAATCAGATTTCACTTATCT
          1 AGAGTGTAAAGAGTGATTAATCTTTACAAAGCATCGGAAACTCCGGAATCAGATTTCGCTTATCT

              *         
        235 CATATGAACTCA
         66 CAGATGAACTCA

                                    *         *                              
        247 AGAGTGTAAAGAGTGATTAATCTTGACAAAGCATTGGAAACTCCGGAATCAGATTTCGCTTATCT
          1 AGAGTGTAAAGAGTGATTAATCTTTACAAAGCATCGGAAACTCCGGAATCAGATTTCGCTTATCT

                     *  
        312 CAGATGAACCCA
         66 CAGATGAACTCA

              
        324 AG
          1 AG

        326 GTTATCAAAT


Statistics
Matches: 148,  Mismatches: 8, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  77  148  1.00

ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27


Consensus pattern (77 bp):   
AGAGTGTAAAGAGTGATTAATCTTTACAAAGCATCGGAAACTCCGGAATCAGATTTCGCTTATCT
CAGATGAACTCA
Done.