Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03805.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4247
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29


Found at i:1133 original size:21 final size:21

Alignment explanation


    Indices: 1109--1150  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1099 AAAGGAAGTG

                                 
       1109 TTAGATTAGAGATTGAAGGCA
          1 TTAGATTAGAGATTGAAGGCA

                                 
       1130 TTAGATTAGAGATTGAAGGCA
          1 TTAGATTAGAGATTGAAGGCA

       1151 CTAAATAGAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.38, C:0.05, G:0.29, T:0.29


Consensus pattern (21 bp):   
TTAGATTAGAGATTGAAGGCA

Found at i:1549 original size:20 final size:20

Alignment explanation


    Indices: 1524--1563  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1514 ATACTCATTG

                                
       1524 TTTGGTCGGAAAGCAACATA
          1 TTTGGTCGGAAAGCAACATA

                                
       1544 TTTGGTCGGAAAGCAACATA
          1 TTTGGTCGGAAAGCAACATA

       1564 GGGAGGAAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25


Consensus pattern (20 bp):   
TTTGGTCGGAAAGCAACATA
Done.