Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01284.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 905
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:731 original size:26 final size:26

Alignment explanation


    Indices: 702--754  Score: 97
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        692 CATTGCAGCA

                                      
        702 ACTTGCTATGAAATTCTTAGAACGTG
          1 ACTTGCTATGAAATTCTTAGAACGTG

                 *                    
        728 ACTTGGTATGAAATTCTTAGAACGTG
          1 ACTTGCTATGAAATTCTTAGAACGTG

             
        754 A
          1 A

        755 GGAGATCGCA


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34


Consensus pattern (26 bp):   
ACTTGCTATGAAATTCTTAGAACGTG
Done.