Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03826.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1807
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29


Found at i:1538 original size:54 final size:54

Alignment explanation


    Indices: 1456--1561  Score: 167
    Period size: 54  Copynumber: 2.0  Consensus size: 54

       1446 AAAAAAGGCG

                                *  *               *              
       1456 CAGGCAACTCCTTCAACTCAGAAGCTCTTTCCATTCACCTTGTGATCACAGGTA
          1 CAGGCAACTCCTTCAACTCAAAAACTCTTTCCATTCACCATGTGATCACAGGTA

                   *                             *              
       1510 CAGGCAAGTCCTTCAACTCAAAAACTCTTTCCATTCATCATGTGATCACAGG
          1 CAGGCAACTCCTTCAACTCAAAAACTCTTTCCATTCACCATGTGATCACAGG

       1562 ACAAGATAAC


Statistics
Matches: 47,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  54   47  1.00

ACGTcount: A:0.28, C:0.30, G:0.14, T:0.27


Consensus pattern (54 bp):   
CAGGCAACTCCTTCAACTCAAAAACTCTTTCCATTCACCATGTGATCACAGGTA
Done.