Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga05g03831.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1818
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Found at i:460 original size:228 final size:228
Alignment explanation
Indices: 54--1561 Score: 1347
Period size: 228 Copynumber: 6.6 Consensus size: 228
44 TCTCCTAGAA
* * * * * * *
54 GATGCAGATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTGGAAAGTTCTGATA
1 GATGCAGATTTTTGTGAAAACCCTTACCGGAAAAACCATCACCCTTGAGGTGGAGAGCTCTGACA
* * * *
119 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGCTT
66 CAATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGG-TT
* * * * * * * * *
184 -ATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAGAAAGAGT
130 GATTTTTGCTGGAAAACAGCTCGAAGATGGCAGGACACTTGCGGATTATAACATCCAGAAAGAAT
* * * *
248 CTACCCTCCACCTT-GTCCTT-CGTCTTAGGGGTGG
195 CGACCCTCCA-CTTGGT-CTTGCGACTTCGAGGTGG
* * * * * * *
282 GATGCAGATCTTTGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTGGAGAGCTCCGATA
1 GATGCAGATTTTTGTGAAAACCCTTACCGGAAAAACCATCACCCTTGAGGTGGAGAGCTCTGACA
* * * * *
347 CTATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTG
66 CAATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTG
* * * * * *
412 ATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCAGATTACAACATCCAGAAAGAGTC
131 ATTTTTGCTGGAAAACAGCTCGAAGATGGCAGGACACTTGCGGATTATAACATCCAGAAAGAATC
* * * *
477 TACCCTCCACCTT-GTCCTT-CGTCTTAGGGGTGG
196 GACCCTCCA-CTTGGT-CTTGCGACTTCGAGGTGG
* * * * * *
510 GATGCAGATTTTTGT-AAAACCCTCACCGGAAAAACTATTA-CGTTGGAGGTGGAGAGTTCTGAT
1 GATGCAGATTTTTGTGAAAACCCTTACCGGAAAAACCATCACCCTT-GAGGTGGAGAGCTCTGAC
* * * * * **
573 ACGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGGATCCCACTGGACCAGCAGAGGTT
65 ACAATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTT
* * * * * * * *
638 GATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTATAACATTCAGAAGGAAT
130 GATTTTTGCTGGAAAACAGCTCGAAGATGGCAGGACACTTGCGGATTATAACATCCAGAAAGAAT
* * * * * *
703 CGACCCTCCATTTGGTGTTACGTCTCCGTGGTGG
195 CGACCCTCCACTTGGTCTTGCGACTTCGAGGTGG
* * * * * * * * * * * *
737 CATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTA-CTTTGGAAGTTGAGAGTTCTGAC
1 GATGCAGATTTTTGTGAAAACCCTTACCGGAAAAACCATCACCCTT-GAGGTGGAGAGCTCTGAC
* * * * * *
801 ACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTT
65 ACAATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTT
* * * * *
866 GATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATATCCAGAAAGAGT
130 GATTTTTGCTGGAAAACAGCTCGAAGATGGCAGGACACTTGCGGATTATAACATCCAGAAAGAAT
* * * * *
931 CTACCCTTCACTTGGTGC-TCCGACTGCGTGGTGG
195 CGACCCTCCACTTGGT-CTTGCGACTTCGAGGTGG
* * * * * *
965 AATGCAGATTTTTGTGAAAA-CTTTGACTGGAAAAACTATCA-CATTGGAGGTGGAGAGCTCAGA
1 GATGCAGATTTTTGTGAAAACCCTT-ACCGGAAAAACCATCACCCTT-GAGGTGGAGAGCTCTGA
* * * *
1028 CACAATTGATAATGTGAAGGCCAAGATCCAAGATAAGG-AGGGTATCCCACCTGACCAGCAGAGG
64 CACAATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGG-ATTCCACCAGACCAGCAGAGG
* * * *
1092 TTGATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCA-AAAGG
128 TTGATTTTTGCTGGAAAACAGCTCGAAGATGGCAGGACACTTGCGGATTATAACATCCAGAAA-G
* * * *
1156 AATCGACCCTGCATTTGGTTTTGCGACTTCGAGGAGG
192 AATCGACCCTCCACTTGGTCTTGCGACTTCGAGGTGG
* * * * * * *
1193 GATGCAGATATTCGTGAAGA-CCTTGACCGGTAAAACCATCACCCTGGAGGTCGAGAGCTCGGAC
1 GATGCAGATTTTTGTGAAAACCCTT-ACCGGAAAAACCATCACCCTTGAGGTGGAGAGCTCTGAC
* * * * * * * *
1257 ACCATTGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTT
65 ACAATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTT
* * * *
1322 GATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCA-AAAGGAA
130 GATTTTTGCTGGAAAACAGCTCGAAGATGGCAGGACACTTGCGGATTATAACATCCAGAAA-GAA
* * * *
1386 TCGACCCTGCATTTGGTTTTGCGACTTCGAGGAGG
194 TCGACCCTCCACTTGGTCTTGCGACTTCGAGGTGG
* * * * * * *
1421 GATGCAGATATTCGTGAAGA-CCTTGACCGGGAAAACAATCACCCTGGAGGTGGAGAGCTCAGAC
1 GATGCAGATTTTTGTGAAAACCCTT-ACCGGAAAAACCATCACCCTTGAGGTGGAGAGCTCTGAC
* * * * * * * *
1485 ACGATCGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGAGGTT
65 ACAATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTT
*
1550 GATATTTGCTGG
130 GATTTTTGCTGG
1562 TAAGCAGTTA
Statistics
Matches: 1098, Mismatches: 170, Indels: 24
0.85 0.13 0.02
Matches are distributed among these distances:
226 7 0.01
227 186 0.17
228 900 0.82
229 5 0.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (228 bp):
GATGCAGATTTTTGTGAAAACCCTTACCGGAAAAACCATCACCCTTGAGGTGGAGAGCTCTGACA
CAATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTG
ATTTTTGCTGGAAAACAGCTCGAAGATGGCAGGACACTTGCGGATTATAACATCCAGAAAGAATC
GACCCTCCACTTGGTCTTGCGACTTCGAGGTGG
Found at i:924 original size:455 final size:452
Alignment explanation
Indices: 54--1612 Score: 1576
Period size: 456 Copynumber: 3.4 Consensus size: 452
44 TCTCCTAGAA
* * * * * * * * *
54 GATGCAGATCTTTGTGAAAACCCTT-ACTGGTAAGACCATCACCCTT-GAGGTGGAAAGTTCTGA
1 GATGCAGATTTTTGTGAAAA-CCTTGACCGGAAAAACTATCA-CATTGGAGGTGGAGAGCTCAGA
* * *
117 TACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGC
64 CACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGG-
* * * *
182 TT-ATCTTTGCCGGTAAA-CAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAGAAAG
128 TTGATTTTTGCTGG-AAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTACAACATCCAGAAGG
* * * * * * * * *
245 AGTCTACCCTCCACCTT-GTCCTTCGTCTTAGGGGTGGGATGCAGATCTTTGTAAAAACCCTTAC
192 AATCGACCCTCCA-TTTGGT-CTTCGTCTTCGAGGTGGGATGCAGATATTTGTGAAGA-CCTCAC
* * * * * * * * *
309 TGGTAAGACCATCACCCTT-GAGGTGGAGAGCTCCGATACTATCGATAATGTCAAGGCCAAGATC
254 CGGAAAGACCATCA-CCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCAAGATC
* * *
373 CAAGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGA
318 CAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGG-AAACAGCTCGAAGA
* *
438 TGGTAGGACACTTGCAGATTACAACATCCAGAAAGAGTCTACCCTCCACCTT-GTCCTTCGTCTT
382 TGGTAGGACACTTGCAGATTATAACATCCAGAAAGAGTCTACCCTCCA-CTTGGT-CTTCGACTT
* *
502 AGGGGTGG
445 CGAGGTGG
* * * * * * *
510 GATGCAGATTTTTGT-AAAACCCTCACCGGAAAAACTATTACGTTGGAGGTGGAGAGTTCTGATA
1 GATGCAGATTTTTGTGAAAACCTTGACCGGAAAAACTATCACATTGGAGGTGGAGAGCTCAGACA
* * * * * **
574 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGGATCCCACTGGACCAGCAGAGGTTG
66 CAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTG
* *
639 ATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTATAACATTCAGAAGGAATC
131 ATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTACAACATCCAGAAGGAATC
* * * * * *
704 GACCCTCCATTTGGTGTTACGTCTCCGTGGTGGCATGCAAATTTTTGTGAAGACTCTCACCGGAA
196 GACCCTCCATTTGGTCTT-CGTCTTCGAGGTGGGATGCAGATATTTGTGAAGAC-CTCACCGGAA
* * * * * * * *
769 AGACTATTACTTTGGAAGTTGAGAGTTCTGACACCATTGACAATGTAAAAGCTAAGATCCAGGAC
259 AGACCATCACCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCAAGATCCAGGAC
834 AAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAG
324 AAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGG-AAACAGCTCGAAGATGGTAG
* * * * *
899 GACACTTGCAGATTATAATATCCAGAAAGAGTCTACCCTTCACTTGGTGCTCCGACTGCGTGGTG
388 GACACTTGCAGATTATAACATCCAGAAAGAGTCTACCCTCCACTTGGT-CTTCGACTTCGAGGTG
964 G
452 G
* * *
965 AATGCAGATTTTTGTGAAAACTTTGACTGGAAAAACTATCACATTGGAGGTGGAGAGCTCAGACA
1 GATGCAGATTTTTGTGAAAACCTTGACCGGAAAAACTATCACATTGGAGGTGGAGAGCTCAGACA
* *
1030 CAATTGATAATGTGAAGGCCAAGATCCAAGATAAGG-AGGGTATCCCACCTGACCAGCAGAGGTT
66 CAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGG-ATCCCACCAGACCAGCAGAGGTT
* * ** * * * * *
1094 GATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCAAAAGGAAT
130 GATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTACAACATCCAGAAGGAAT
* * * * * *
1159 CGACCCTGCATTTGGTTTTGCGACTTCGAGGAGGGATGCAGATATTCGTGAAGACCTTGACCGGT
195 CGACCCTCCATTTGGTCTT-CGTCTTCGAGGTGGGATGCAGATATTTGTGAAGACC-TCACCGG-
* * * * * *
1224 AAA-ACCATCACCCTGGAGGTCGAGAGCTCGGACACCATTGACAATGTGAAAGCGAAAATTCAGG
257 AAAGACCATCACCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCAAGATCCAGG
* * * * *
1288 ACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGG
322 ACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGAAA-CAGCTCGAAGATGGT
* * * * * * *
1353 AGGACCCTTGCGGATTATAACATCCA-AAAGGAATCGACCCTGCATTTGGTTTTGCGACTTCGAG
386 AGGACACTTGCAGATTATAACATCCAGAAA-GAGTCTACCCTCCACTTGGTCTT-CGACTTCGAG
*
1417 GAGG
449 GTGG
* * * * * **
1421 GATGCAGATATTCGTGAAGACCTTGACCGGGAAAACAATCACCCTGGAGGTGGAGAGCTCAGACA
1 GATGCAGATTTTTGTGAAAACCTTGACCGGAAAAACTATCACATTGGAGGTGGAGAGCTCAGACA
* * * * * * * * * *
1486 CGATCGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGAGGTTG
66 CAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTG
* * * * * * *
1551 ATATTTGCTGGTAAGCAG-TTAGAGGATGGTCGAACTCTAGCTGACTACAATATCCAGAAGGA
131 ATTTTTGCTGGAAAGCAGCTT-GAAGATGGCCGAACTCTTGCGGACTACAACATCCAGAAGGA
1613 GTCCACACTG
Statistics
Matches: 919, Mismatches: 166, Indels: 36
0.82 0.15 0.03
Matches are distributed among these distances:
454 22 0.02
455 372 0.40
456 519 0.56
457 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (452 bp):
GATGCAGATTTTTGTGAAAACCTTGACCGGAAAAACTATCACATTGGAGGTGGAGAGCTCAGACA
CAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTG
ATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTACAACATCCAGAAGGAATC
GACCCTCCATTTGGTCTTCGTCTTCGAGGTGGGATGCAGATATTTGTGAAGACCTCACCGGAAAG
ACCATCACCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCAAGATCCAGGACAA
GGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGAAACAGCTCGAAGATGGTAGGAC
ACTTGCAGATTATAACATCCAGAAAGAGTCTACCCTCCACTTGGTCTTCGACTTCGAGGTGG
Found at i:1647 original size:684 final size:681
Alignment explanation
Indices: 142--1648 Score: 1637
Period size: 684 Copynumber: 2.2 Consensus size: 681
132 CAAGGCCAAG
* * * * *
142 ATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGCTT-ATCTTTGCCGGTAAACAGCTTG
1 ATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGG-TTGATATTTGCTGGTAAACAG-TTG
* * * *
206 AAGATGGCCGAACTCTTGCGGATTACAACATCCAGAAAGAGTCTACCCTCCACCTTGTCCTTCGT
64 AAGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAGAGTCTACCCTCCA-CTTGTCCTTCGA
** * * * * *
271 CTTAGGGGTGGGATGCAGATCTTTGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTGGA
128 CTCCGTGGTGGAATGCAGATCTTTGTAAAAACCCTTACTGGAAAAACCATCACCATTGAGGTGGA
* * * * *
336 GAGCTCCGATACTATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCAGATC
193 GAGCTCAGACACAATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACC
*
401 AGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCAGATTACAACATC
258 AGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGGGAGGACACTTGCAGATTACAACATC
* * * * * * *
466 CAGAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGGATGCAGATTTTTGTAAAACC
323 CAGAAAGAATCGACCCTCCACCTTGTCCTTCGACTTAGAGGAGGGATGCAGATATTCGTAAAACC
* * ** * * * * * * * *
531 CTCACCGGAAAAACTATTACGTTGGAGGTGGAGAGTTCTGATACGATTGATAATGTTAAGGCCAA
388 CTCACCGGAAAAACCATCACCCTGGAGGTCGAGAGCTCGGACACCATTGACAATGTGAAAGCCAA
* * ** *
596 GATTCAGGATAAGGAAGGGATCCCACTGGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTTG
453 AATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTCG
* * * * *
661 AAGATGGCCGAACTCTTGCGGACTATAACATTCAGAAGGAATCGACCCTCCATTTGGTGTTACGT
518 AAGATGGCAGAACCCTTGCGGACTATAACATCCAAAAGGAATCGACCCTCCATTTGGTGTTACGA
* * * * * * ** *
726 CTCCGTGGTGGCATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGA
583 CTCCGAGGAGGCATGCAAATATTCGTGAAGACTCTCACCGGAAAGACAATCACCCTGGAAGTGGA
* * * * *
791 GAGTTCTGACACCATTGACAATGTAAAAGCTAAG
648 GAGCTCAGACACCATCGACAATGTAAAAGCGAAA
* * * *
825 ATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGCAAACAGCTCGA
1 ATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTGATATTTGCTGGTAAACAG-TTGA
* * * * * * *
890 AGATGGTAGGACACTTGCAGATTATAATATCCAGAAAGAGTCTACCCTTCACTTGGTGCTCCGAC
65 AGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAGAGTCTACCCTCCACTT-GTCCTTCGAC
* * * * *
955 TGCGTGGTGGAATGCAGATTTTTGTGAAAA-CTTTGACTGGAAAAACTATCA-CATTGGAGGTGG
129 TCCGTGGTGGAATGCAGATCTTTGTAAAAACCCTT-ACTGGAAAAACCATCACCATT-GAGGTGG
* * * *
1018 AGAGCTCAGACACAATTGATAATGTGAAGGCCAAGATCCAAGATAAGG-AGGGTATCCCACCTGA
192 AGAGCTCAGACACAATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGG-ATCCCACCAGA
* * * * * * *
1082 CCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACA
256 CCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGGGAGGACACTTGCAGATTACAACA
* * * *
1147 TCCA-AAAGGAATCGACCCTGCA-TTTGGT-TTTGCGACTTCGAGGAGGGATGCAGATATTCGTG
321 TCCAGAAA-GAATCGACCCTCCACCTT-GTCCTT-CGACTTAGAGGAGGGATGCAGATATTCGT-
* * * *
1209 AAGACCTTGACCGGTAAAACCATCACCCTGGAGGTCGAGAGCTCGGACACCATTGACAATGTGAA
382 AAAACCCTCACCGGAAAAACCATCACCCTGGAGGTCGAGAGCTCGGACACCATTGACAATGTGAA
* * * *
1274 AGCGAAAATTCAGGACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTTGATTTTTGCTGGAAAGC
447 AGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATTTTTGCTGGAAAGC
* * * * * *
1339 AGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCAAAAGGAATCGACCCTGCATTTGGTT
512 AGCTCGAAGATGGCAGAACCCTTGCGGACTATAACATCCAAAAGGAATCGACCCTCCATTTGGTG
* * * * *
1404 TTGCGACTTCGAGGAGGGATGCAGATATTCGTGAAGAC-CTTGACCGGGAAA-ACAATCACCCTG
577 TTACGACTCCGAGGAGGCATGCAAATATTCGTGAAGACTC-TCACC-GGAAAGACAATCACCCTG
* * *
1467 GAGGTGGAGAGCTCAGACACGATCGACAATGTGAAAGCGAAA
640 GAAGTGGAGAGCTCAGACACCATCGACAATGTAAAAGCGAAA
* * *
1509 ATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGAGGTTGATATTTGCTGGTAAGCAGTTAGA
1 ATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTGATATTTGCTGGTAAACAGTT-GA
* * * * * * * * *
1574 GGATGGTCGAACTCTAGCTGACTACAATATCCAGAAGGAGTCCACACTGCATCTTGTCCTTCGCC
65 AGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAGAGTCTACCCTCCA-CTTGTCCTTCGAC
1639 TCCGTGGTGG
129 TCCGTGGTGG
1649 TTTCTAATTG
Statistics
Matches: 672, Mismatches: 139, Indels: 25
0.80 0.17 0.03
Matches are distributed among these distances:
682 22 0.03
683 297 0.44
684 345 0.51
685 8 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.23
Consensus pattern (681 bp):
ATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTGATATTTGCTGGTAAACAGTTGAA
GATGGTCGAACTCTTGCAGATTACAATATCCAGAAAGAGTCTACCCTCCACTTGTCCTTCGACTC
CGTGGTGGAATGCAGATCTTTGTAAAAACCCTTACTGGAAAAACCATCACCATTGAGGTGGAGAG
CTCAGACACAATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGC
AGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGGGAGGACACTTGCAGATTACAACATCCAG
AAAGAATCGACCCTCCACCTTGTCCTTCGACTTAGAGGAGGGATGCAGATATTCGTAAAACCCTC
ACCGGAAAAACCATCACCCTGGAGGTCGAGAGCTCGGACACCATTGACAATGTGAAAGCCAAAAT
TCAGGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAAG
ATGGCAGAACCCTTGCGGACTATAACATCCAAAAGGAATCGACCCTCCATTTGGTGTTACGACTC
CGAGGAGGCATGCAAATATTCGTGAAGACTCTCACCGGAAAGACAATCACCCTGGAAGTGGAGAG
CTCAGACACCATCGACAATGTAAAAGCGAAA
Done.