Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga05g03831.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2046
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Found at i:452 original size:228 final size:228
Alignment explanation
Indices: 55--1843 Score: 1324
Period size: 228 Copynumber: 7.9 Consensus size: 228
45 CTCCTAGAAG
* * * * *
55 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGTTCTGATAC
1 ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
* * * * * * * * * *
120 TATCGATAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCTCCTGACCAACAAAGGCTT-
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGG-TTG
* * * * * *
184 ATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTGCCGACTACAATATCCA-AAAGGAGT
130 ATTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAA-GAGT
* * *
248 CCACCCTCCACCTAGTGCTTCGTCTAAGGGGTGGC
194 CTACCCTCCACCTGGTGCTTCGTCTTAGGGGTGGC
* * * * * *
283 ATGCAGATATTCGTGAAAACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCTGATAC
1 ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
*
348 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGCTT-
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGG-TTG
* * *
412 ATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAGAAAGAGTC
130 ATTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAGTC
* * *
477 TACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGG
195 TACCCTCCACCTGGTGCTTCGTCTTAGGGGTGGC
* * * * * *
511 ATGCAGATCTTTGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTGGAGAGCTCCGATAC
1 ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
* * * *
576 TATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGA
* * ** * *
641 TTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCAGATTACAACATCCAGAAAGAGTCT
131 TTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAGTCT
* * *
706 ACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGG
196 ACCCTCCACCTGGTGCTTCGTCTTAGGGGTGGC
* * * * * **
739 ATGCAGATTTTTGT-AAAACCCTCACCGGAAAAACTATTACGTTGGAGGTGGAGAGTTCTGATAC
1 ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
* * * * * **
803 GATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGGATCCCACTGGACCAGCAGAGGTTGA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGA
* * * * * * * * *
868 TTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTATAACATTCAGAAGGAATCG
131 TTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAGTCT
** ** *
933 ACCCTCCATTTGGTG-TTACGTCTCCGTGGTGGC
196 ACCCTCCACCTGGTGCTT-CGTCTTAGGGGTGGC
* * * * * * * ** * * *
966 ATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTGACAC
1 ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
* * * * * * * *
1031 CATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGA
* * * ** * * * *
1096 TTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATATCCAGAAAGAGTCT
131 TTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAGTCT
* * * * ** * *
1161 ACCCTTCACTTGGTGCTCCGACTGCGTGGTGGA
196 ACCCTCCACCTGGTGCTTCGTCTTAGGGGTGGC
* * * ** * * *
1194 ATGCAGATTTTTGTGAAAA-CTTTGACTGGAAAAACTATCACATTGGAGGTGGAGAGCTCAGACA
1 ATGCAGATTTTTGTGAAAACCCTT-ACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATA
* * *
1258 CAATTGATAATGTGAAGGCCAAGATCCAAGATAAGG-AGGGTATCCCACCTGACCAGCAGAGGTT
65 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGG-ATCCCACCAGACCAGCAGAGGTT
* * * * ** * * * * *
1322 GATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCA-AAAGGAA
129 GATTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAA-GAG
* * ** * * * * * *
1386 TCGACCCTGCATTTGGT-TTTGCGACTTCGAGGAGGG
193 TCTACCCTCCACCTGGTGCTT-CGTCTTAGGGGTGGC
* * * * * * * *
1422 ATGCAGATATTCGTGAAGA-CCTTGACCGGTAAA-ACCATCACCCTGGAGGTCGAGAGCTCGGAC
1 ATGCAGATTTTTGTGAAAACCCTT-ACTGG-AAAGACCATCACCCTGGAGGTGGAGAGTTCTGAT
* * * * * * * * * * *
1485 ACCATTGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTT
64 ACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTT
* * * * ** * * * * *
1550 GATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCA-AAAGGAA
129 GATTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAA-GAG
* * ** * * * * * *
1614 TCGACCCTGCATTTGGT-TTTGCGACTTCGAGGAGGG
193 TCTACCCTCCACCTGGTGCTT-CGTCTTAGGGGTGGC
* * * * * * * *
1650 ATGCAGATATTCGTGAAGA-CCTTGACCGGGAAA-ACAATCACCCTGGAGGTGGAGAGCTCAGAC
1 ATGCAGATTTTTGTGAAAACCCTT-A-CTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGAT
* * * * * * * * * * *
1713 ACGATCGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGAGGTT
64 ACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTT
* * * * * * * * * * *
1778 GATATTTGCTGGTAAGCAG-TTAGAGGATGGTCGAACTCTAGCTGACTACAATATCCAGAAGGAG
129 GATTTTTGCCGGAAAACAGCTT-GAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAG
1842 TC
193 TC
1844 CACACTGCAT
Statistics
Matches: 1331, Mismatches: 216, Indels: 28
0.85 0.14 0.02
Matches are distributed among these distances:
226 2 0.00
227 191 0.14
228 1123 0.84
229 15 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (228 bp):
ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGA
TTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAGTCT
ACCCTCCACCTGGTGCTTCGTCTTAGGGGTGGC
Found at i:1389 original size:456 final size:453
Alignment explanation
Indices: 277--1816 Score: 1565
Period size: 456 Copynumber: 3.4 Consensus size: 453
267 TCGTCTAAGG
* * * * * * * *
277 GGTGGCATGCAGATATTCGTGAAAACTCTT-ACTGGCAAGACCATCACCCTCGAGGTGGAAAGTT
1 GGTGGGATGCAGATATTCGTGAAAAC-CTTGACCGGAAAAACTATCACCCTGGAGGTGGAGAGCT
* * * *
341 CTGATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAG
65 CAGACACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAG
* * *
406 AGGCTT-ATCTTTGCCGGTAAA-CAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAG
130 AGG-TTGATTTTTGCTGG-AAAGCAGCTTGAAGATGGCCGAACTCTTGCGGATTATAACATCCA-
* * * * * * * *
469 AAA-GAGTCTACCCTCCACCTT-GTCCTTCGTCTTAGGGGTGGGATGCAGATCTTTGTAAAAACC
192 AAAGGAATCGACCCTCCA-TTTGGT-CTTCGTCTTCGAGGTGGGATGCAGATATTTGTGAAGA-C
* * * * * * * * * *
532 CTTACTGGTAAGACCATCACCCTT-GAGGTGGAGAGCTCCGATACTATCGATAATGTCAAGGCCA
254 CTCACCGGAAAGACCATCA-CCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCA
* * *
596 AGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCCGGAAAACAACTC
318 AGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGG-AAACAGCTC
* *
661 GAAGATGGTAGGACACTTGCAGATTACAACATCCAGAAAGAGTCTACCCTCCACCTT-GTCCTTC
382 GAAGATGGTAGGACACTTGCAGATTATAACATCCAGAAAGAGTCTACCCTCCA-CTTGGTCCTCC
* * *
725 GTCTTAGG
446 GACTTCGA
* * * * * ** *
733 GGTGGGATGCAGATTTTTGT-AAAACCCTCACCGGAAAAACTATTACGTTGGAGGTGGAGAGTTC
1 GGTGGGATGCAGATATTCGTGAAAACCTTGACCGGAAAAACTATCACCCTGGAGGTGGAGAGCTC
* * * * * * * **
797 TGATACGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGGATCCCACTGGACCAGCAGA
66 AGACACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGA
* * *
862 GGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTATAACATTCAGAAG
131 GGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGATTATAACATCCAAAAG
* * * * * *
927 GAATCGACCCTCCATTTGGTGTTACGTCTCCGTGGTGGCATGCAAATTTTTGTGAAGACTCTCAC
196 GAATCGACCCTCCATTTGGTCTT-CGTCTTCGAGGTGGGATGCAGATATTTGTGAAGAC-CTCAC
* * * * * * * *
992 CGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTGACACCATTGACAATGTAAAAGCTAAGATCC
259 CGGAAAGACCATCACCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCAAGATCC
1057 AGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGAT
324 AGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGG-AAACAGCTCGAAGAT
* * * *
1122 GGTAGGACACTTGCAGATTATAATATCCAGAAAGAGTCTACCCTTCACTTGGTGCTCCGACTGCG
388 GGTAGGACACTTGCAGATTATAACATCCAGAAAGAGTCTACCCTCCACTTGGTCCTCCGACTTCG
*
1187 T
453 A
* * * * * **
1188 GGTGGAATGCAGATTTTTGTGAAAACTTTGACTGGAAAAACTATCACATTGGAGGTGGAGAGCTC
1 GGTGGGATGCAGATATTCGTGAAAACCTTGACCGGAAAAACTATCACCCTGGAGGTGGAGAGCTC
* *
1253 AGACACAATTGATAATGTGAAGGCCAAGATCCAAGATAAGG-AGGGTATCCCACCTGACCAGCAG
66 AGACACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGG-ATCCCACCAGACCAGCAG
* * ** * *
1317 AGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCAAAA
130 AGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGATTATAACATCCAAAA
* * * * * *
1382 GGAATCGACCCTGCATTTGGTTTTGCGACTTCGAGGAGGGATGCAGATATTCGTGAAGACCTTGA
195 GGAATCGACCCTCCATTTGGTCTT-CGTCTTCGAGGTGGGATGCAGATATTTGTGAAGACC-TCA
* * * * *
1447 CCGGTAAA-ACCATCACCCTGGAGGTCGAGAGCTCGGACACCATTGACAATGTGAAAGCGAAAAT
258 CCGG-AAAGACCATCACCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCAAGAT
* * * * *
1511 TCAGGACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAGG
322 CCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGAAA-CAGCTCGAAG
* * * * * * * ** *
1576 ATGGGAGGACCCTTGCGGATTATAACATCCA-AAAGGAATCGACCCTGCATTTGGTTTTGCGACT
386 ATGGTAGGACACTTGCAGATTATAACATCCAGAAA-GAGTCTACCCTCCACTTGGTCCTCCGACT
1640 TCGA
450 TCGA
* * * *
1644 GGAGGGATGCAGATATTCGTGAAGACCTTGACCGGGAAAACAATCACCCTGGAGGTGGAGAGCTC
1 GGTGGGATGCAGATATTCGTGAAAACCTTGACCGGAAAAACTATCACCCTGGAGGTGGAGAGCTC
* * * * * * * * * *
1709 AGACACGATCGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGA
66 AGACACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGA
* * * *
1774 GGTTGATATTTGCTGGTAAGCAG-TTAGAGGATGGTCGAACTCT
131 GGTTGATTTTTGCTGGAAAGCAGCTT-GAAGATGGCCGAACTCT
1817 AGCTGACTAC
Statistics
Matches: 902, Mismatches: 165, Indels: 34
0.82 0.15 0.03
Matches are distributed among these distances:
454 20 0.02
455 371 0.41
456 505 0.56
457 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (453 bp):
GGTGGGATGCAGATATTCGTGAAAACCTTGACCGGAAAAACTATCACCCTGGAGGTGGAGAGCTC
AGACACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGA
GGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGATTATAACATCCAAAAG
GAATCGACCCTCCATTTGGTCTTCGTCTTCGAGGTGGGATGCAGATATTTGTGAAGACCTCACCG
GAAAGACCATCACCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCAAGATCCAG
GACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGAAACAGCTCGAAGATGGT
AGGACACTTGCAGATTATAACATCCAGAAAGAGTCTACCCTCCACTTGGTCCTCCGACTTCGA
Found at i:1875 original size:684 final size:681
Alignment explanation
Indices: 280--1876 Score: 1646
Period size: 683 Copynumber: 2.3 Consensus size: 681
270 TCTAAGGGGT
* * * * * * * * * * *
280 GGCATGCAGATATTCGTGAAAACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCTGA
1 GGCATGCAAATATTCGTGAAGACTCTCACCGGAAAGACAATCACCCTGGAAGTGGAGAGCTCAGA
* * * * * * * * * * *
345 TACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGC
66 CACCATCGACAATGTAAAAGCGAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGG-
* * * * *
410 TT-ATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAGAAAGA
130 TTGATATTTGCTGGTAAACAG-TTGAAGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAGA
* ** * *
474 GTCTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGGATGCAGATCTTTGTAAAAACCCTTACTG
194 GTCTACCCTCCA-CTTGTCCTTCGACTCCGTGGTGGAATGCAGATCTTTGTAAAAACCCTTACTG
* * * * * *
539 GTAAGACCATCACCCTTGAGGTGGAGAGCTCCGATACTATCGATAATGTCAAGGCCAAGATCCAA
258 GAAAAACCATCACCATTGAGGTGGAGAGCTCAGACACAATCGATAATGTCAAGGCCAAGATCCAA
* *
604 GACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGG
323 GACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGG
* * * * *
669 TAGGACACTTGCAGATTACAACATCCAGAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTTAGGG
388 GAGGACACTTGCAGATTACAACATCCAGAAAGAATCGACCCTCCACCTTGTCCTTCGACTTAGAG
* * * * * ** * * *
734 GTGGGATGCAGATTTTTGTAAAACCCTCACCGGAAAAACTATTACGTTGGAGGTGGAGAGTTCTG
453 GAGGGATGCAGATATTCGTAAAACCCTCACCGGAAAAACCATCACCCTGGAGGTCGAGAGCTCGG
* * * * * * * **
799 ATACGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGGATCCCACTGGACCAGCAGAGG
518 ACACCATTGACAATGTGAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAGAGG
* * * * *
864 TTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTATAACATTCAGAAGGA
583 TTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGAACCCTTGCGGACTATAACATCCAAAAGGA
* * *
929 ATCGACCCTCCATTTGGTGTTACGTCTCCGTGGT
648 ATCGACCCTCCATTTGGTGTTACGACTCCGAGGA
* * * * ** * * *
963 GGCATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTGA
1 GGCATGCAAATATTCGTGAAGACTCTCACCGGAAAGACAATCACCCTGGAAGTGGAGAGCTCAGA
* * * *
1028 CACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGT
66 CACCATCGACAATGTAAAAGCGAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGT
* * * * * * *
1093 TGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATATCCAGAAAGAG
131 TGATATTTGCTGGTAAACAG-TTGAAGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAGAG
* * * * * * *
1158 TCTACCCTTCACTTGGTGCTCCGACTGCGTGGTGGAATGCAGATTTTTGTGAAAA-CTTTGACTG
195 TCTACCCTCCACTT-GTCCTTCGACTCCGTGGTGGAATGCAGATCTTTGTAAAAACCCTT-ACTG
* * *
1222 GAAAAACTATCA-CATTGGAGGTGGAGAGCTCAGACACAATTGATAATGTGAAGGCCAAGATCCA
258 GAAAAACCATCACCATT-GAGGTGGAGAGCTCAGACACAATCGATAATGTCAAGGCCAAGATCCA
* * * * * *
1286 AGATAAGG-AGGGTATCCCACCTGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGAT
322 AGACAAGGAAGGG-ATCCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGAT
* * * * * *
1350 GGGAGGACCCTTGCGGATTATAACATCCA-AAAGGAATCGACCCTGCA-TTTGGT-TTTGCGACT
386 GGGAGGACACTTGCAGATTACAACATCCAGAAA-GAATCGACCCTCCACCTT-GTCCTT-CGACT
* * * * *
1412 TCGAGGAGGGATGCAGATATTCGTGAAGACCTTGACCGGTAAAACCATCACCCTGGAGGTCGAGA
448 TAGAGGAGGGATGCAGATATTCGT-AAAACCCTCACCGGAAAAACCATCACCCTGGAGGTCGAGA
* * * *
1477 GCTCGGACACCATTGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCTCCAGACCAG
512 GCTCGGACACCATTGACAATGTGAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAG
* * * *
1542 CAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCA
577 CAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGAACCCTTGCGGACTATAACATCCA
* * * *
1607 AAAGGAATCGACCCTGCATTTGGTTTTGCGACTTCGAGGA
642 AAAGGAATCGACCCTCCATTTGGTGTTACGACTCCGAGGA
* * * *
1647 GGGATGCAGATATTCGTGAAGAC-CTTGACCGGGAAA-ACAATCACCCTGGAGGTGGAGAGCTCA
1 GGCATGCAAATATTCGTGAAGACTC-TCACC-GGAAAGACAATCACCCTGGAAGTGGAGAGCTCA
* * * *
1710 GACACGATCGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGAG
64 GACACCATCGACAATGTAAAAGCGAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAG
* * * * * *
1775 GTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTCGAACTCTAGCTGACTACAATATCCAGAAGG
129 GTTGATATTTGCTGGTAAACAGTT-GAAGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAG
* * * *
1840 AGTCCACACTGCATCTTGTCCTTCGCCTCCGTGGTGG
193 AGTCTACCCTCCA-CTTGTCCTTCGACTCCGTGGTGG
1877 TTTCTAATTG
Statistics
Matches: 741, Mismatches: 160, Indels: 25
0.80 0.17 0.03
Matches are distributed among these distances:
682 22 0.03
683 366 0.49
684 345 0.47
685 8 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (681 bp):
GGCATGCAAATATTCGTGAAGACTCTCACCGGAAAGACAATCACCCTGGAAGTGGAGAGCTCAGA
CACCATCGACAATGTAAAAGCGAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGT
TGATATTTGCTGGTAAACAGTTGAAGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAGAGT
CTACCCTCCACTTGTCCTTCGACTCCGTGGTGGAATGCAGATCTTTGTAAAAACCCTTACTGGAA
AAACCATCACCATTGAGGTGGAGAGCTCAGACACAATCGATAATGTCAAGGCCAAGATCCAAGAC
AAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGGGAG
GACACTTGCAGATTACAACATCCAGAAAGAATCGACCCTCCACCTTGTCCTTCGACTTAGAGGAG
GGATGCAGATATTCGTAAAACCCTCACCGGAAAAACCATCACCCTGGAGGTCGAGAGCTCGGACA
CCATTGACAATGTGAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTG
ATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGAACCCTTGCGGACTATAACATCCAAAAGGAATC
GACCCTCCATTTGGTGTTACGACTCCGAGGA
Done.