Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03836.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3539
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:3292 original size:12 final size:12

Alignment explanation


    Indices: 3275--3299  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       3265 TTTATGAATA

                        
       3275 TAATAGGTTGAC
          1 TAATAGGTTGAC

                        
       3287 TAATAGGTTGAC
          1 TAATAGGTTGAC

             
       3299 T
          1 T

       3300 TCGTTGCAAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36


Consensus pattern (12 bp):   
TAATAGGTTGAC
Done.